Showing GR-Card for GR00553: Ulcerative colitis (HGVRS2704)

Record Information
Version1.0
Creation Date2019-04-04 18:01:18 UTC
Last Updated2020-04-06 20:49:15 UTC
GWAS-ROCS IDGR00553
Study Information
Condition/PhenotypeUlcerative colitis
GWAS Central Data Set IDHGVRS2704
PubMed ID23128233
Meta-Analysis (Yes/No)No
Control Subjects38457
Case Subjects38607
SNPs
NameOdds RatioAllele Frequencyp-value
rs69270221.440.5355.0e-133
rs64268331.270.5422.0e-68
rs60173421.230.531.0e-43
rs43808741.140.4052.0e-26
rs28169581.230.8872.0e-17
rs5617221.120.6635.0e-17
rs7985021.130.7096.0e-17
rs47281421.10.4444.0e-14
rs172292851.120.4962.0e-13
rs107974321.080.5223.0e-12
rs37749591.120.3584.0e-12
rs111505891.090.4636.0e-10
rs11265101.080.3632.0e-09
rs72100861.110.7972.0e-09
rs2545601.060.3973.0e-09
rs4839051.060.2921.0e-08
rs98477101.060.4161.0e-08
rs117396631.070.762.0e-08
rs60887651.080.4372.0e-08
rs283747151.080.7382.0e-08
rs47226721.090.1832.0e-08
rs10168831.10.8173.0e-08
rs17287851.080.7674.0e-08
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Simulated Population
ROC PlotGr00553
AUROC0.608299
Logistic Regression Equationlog(p/(1 - p)) = 0.303 - 2.584(rs6927022) - 1.383(rs6426833) + 1.562(rs6017342) - 0.387(rs4380874) - 0.267(rs2816958) + 0.150(rs561722) + 0.199(rs798502) + 0.042(rs4728142) + 0.396(rs17229285) + 1.097(rs10797432) - 14.624(rs3774959) + 0.116(rs11150589) + 14.341(rs1126510) - 0.228(rs7210086) + 0.295(rs254560) + 0.171(rs483905) + 0.113(rs9847710) + 0.222(rs11739663) - 0.029(rs6088765) + 0.073(rs28374715) - 0.015(rs4722672) + 0.041(rs1016883) + 0.317(rs1728785)
Heritability0.047
Regression TypeOLS
Download FileGR00553.csv