Showing GR-Card for GR00516: Testicular germ cell cancer (HGVRS3457)

Record Information
Version1.0
Creation Date2019-04-04 18:01:17 UTC
Last Updated2020-04-06 20:49:15 UTC
GWAS-ROCS IDGR00516
Study Information
Condition/PhenotypeTesticular germ cell cancer
GWAS Central Data Set IDHGVRS3457
PubMed ID23666240
Meta-Analysis (Yes/No)No
Control Subjects15028
Case Subjects2050
SNPs
NameOdds RatioAllele Frequencyp-value
rs9950302.260.82.0e-50
rs46248201.520.543.0e-31
rs7553831.380.632.0e-26
rs2101381.440.192.0e-24
rs46359691.390.25.0e-24
rs29003331.320.621.0e-13
rs27204601.240.612.0e-10
rs28391861.260.461.0e-09
rs99057041.210.673.0e-09
rs80461481.320.794.0e-09
rs105104521.240.691.0e-08
rs37906721.20.282.0e-08
rs38056631.250.632.0e-08
rs20724991.190.353.0e-08
rs70101621.220.615.0e-08
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Simulated Population
ROC PlotGr00516
AUROC0.611885
Logistic Regression Equationlog(p/(1 - p)) = 3.317 - 1.265(rs995030) - 0.919(rs4624820) - 16.810(rs755383) - 0.794(rs210138) - 0.286(rs4635969) + 0.366(rs2900333) - 16.081(rs2720460) + 0.306(rs2839186) + 1.288(rs9905704) - 0.051(rs8046148) - 0.070(rs10510452) + 0.473(rs3790672) + 16.088(rs3805663) + 0.192(rs2072499) + 15.705(rs7010162)
Heritability0.050
Regression TypeOLS
Download FileGR00516.csv