Showing GR-Card for GR00098: Breast cancer (HGVRS6420)

Record Information
Version1.0
Creation Date2019-04-04 18:01:09 UTC
Last Updated2020-04-06 20:49:07 UTC
GWAS-ROCS IDGR00098
Study Information
Condition/PhenotypeBreast cancer
GWAS Central Data Set IDHGVRS6420
PubMed ID27117709
Meta-Analysis (Yes/No)No
Control Subjects56820
Case Subjects12272
SNPs
NameOdds RatioAllele Frequencyp-value
rs560694391.160.38.0e-19
rs111558041.160.348.0e-18
rs42457391.130.266.0e-15
rs126626701.20.089.0e-15
rs72970511.162790.761.0e-14
rs47842271.150.241.0e-14
rs22426521.180.23.0e-14
rs107713991.265820.884.0e-13
rs81701.150.191.0e-12
rs174893001.111110.69.0e-10
rs108644591.111110.682.0e-09
rs27361081.12360.711.0e-08
rs127106961.10.362.0e-08
rs110759951.110.243.0e-08
rs109951901.12360.844.0e-08
rs128709421.090.323.0e-07
rs178174491.09890.593.0e-07
rs119037871.111110.759.0e-07
rs1156358311.360.0151.0e-06
rs77261591.090.342.0e-06
rs10119701.110.172.0e-06
rs173569071.09890.73.0e-06
rs670730371.086960.763.0e-06
rs49803831.080.443.0e-06
rs115718331.320.016.0e-06
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Simulated Population
ROC PlotGr00098
AUROC0.550892
Logistic Regression Equationlog(p/(1 - p)) = 1.723 - 0.362(rs56069439) - 16.122(rs11155804) + 0.205(rs4245739) - 0.154(rs12662670) - 16.356(rs7297051) - 16.216(rs4784227) - 0.480(rs2242652) - 0.246(rs10771399) + 0.157(rs8170) - 0.102(rs17489300) - 0.231(rs10864459) - 0.411(rs2736108) + 0.182(rs12710696) + 16.016(rs11075995) + 0.203(rs10995190) + 0.403(rs12870942) + 0.060(rs17817449) + 0.127(rs11903787) - 0.212(rs115635831) + 15.784(rs7726159) + 0.222(rs1011970) + 0.387(rs17356907) + 16.352(rs67073037) + 0.159(rs4980383) + 0.029(rs11571833)
Heritability0.010
Regression TypeOLS
Download FileGR00098.csv