Showing GR-Card for GR00096: Breast cancer (HGVRS5651)

Record Information
Version1.0
Creation Date2019-04-04 18:01:09 UTC
Last Updated2020-04-06 20:49:07 UTC
GWAS-ROCS IDGR00096
Study Information
Condition/PhenotypeBreast cancer
GWAS Central Data Set IDHGVRS5651
PubMed ID25751625
Meta-Analysis (Yes/No)No
Control Subjects60976
Case Subjects62533
SNPs
NameOdds RatioAllele Frequencyp-value
rs29815791.270.46.0e-164
rs38036621.240.264.0e-117
rs785405261.340.082.0e-86
rs5542191.260.122.0e-81
rs759151661.310.061.0e-57
rs133870421.136360.511.0e-55
rs8893121.120.281.0e-39
rs109951901.162790.842.0e-37
rs107713991.162790.885.0e-34
rs8656861.111110.626.0e-34
rs109416791.120.255.0e-32
rs132816151.10.46.0e-31
rs49737681.10.473.0e-30
rs112494331.090.43.0e-27
rs126626701.170.077.0e-27
rs20462101.080.346.0e-24
rs7040101.080.383.0e-23
rs9997371.086960.772.0e-21
rs12920111.086960.582.0e-21
rs173569071.09890.77.0e-21
rs60019301.120.112.0e-20
rs168576091.080.261.0e-17
rs133298351.080.222.0e-17
rs118144481.270.026.0e-17
rs29435591.130.071.0e-16
rs64729031.09890.821.0e-16
rs14326791.070.434.0e-16
rs68285231.111110.881.0e-15
rs48088011.075270.654.0e-15
rs70727761.070.291.0e-14
rs178174491.075270.62.0e-14
rs38171981.070.312.0e-13
rs28230931.075270.733.0e-13
rs5276161.052630.628.0e-13
rs79045191.050.469.0e-13
rs22360071.075270.799.0e-13
rs96934441.070.321.0e-12
rs65049501.063830.725.0e-12
rs67626441.070.49.0e-12
rs48498871.09890.92.0e-11
rs6164881.063830.674.0e-11
rs77079211.075270.775.0e-11
rs9417641.070.346.0e-11
rs118206461.052630.591.0e-10
rs39030721.052630.531.0e-10
rs131626531.052630.551.0e-10
rs175291111.060.222.0e-10
rs7204751.063830.754.0e-10
rs2042471.050.444.0e-10
rs97905171.050.221.0e-09
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Simulated Population
ROC PlotGr00096
AUROC0.656029
Logistic Regression Equationlog(p/(1 - p)) = 0.273 - 34.523(rs2981579) - 20.842(rs3803662) - 1.362(rs78540526) - 0.518(rs554219) - 2.379(rs75915166) - 0.698(rs13387042) - 0.294(rs889312) - 0.515(rs10995190) - 0.215(rs10771399) - 17.326(rs865686) - 0.141(rs10941679) - 17.370(rs13281615) - 0.965(rs4973768) + 17.388(rs11249433) - 16.799(rs12662670) - 0.076(rs2046210) - 0.179(rs704010) - 17.538(rs999737) - 0.273(rs1292011) - 0.377(rs17356907) + 0.563(rs6001930) + 17.282(rs16857609) - 17.212(rs13329835) + 0.248(rs11814448) + 19.760(rs2943559) + 0.205(rs6472903) - 0.061(rs1432679) + 0.127(rs6828523) - 0.062(rs4808801) + 3.441(rs7072776) + 0.156(rs17817449) + 0.149(rs3817198) - 0.020(rs2823093) + 17.263(rs527616) + 1.086(rs7904519) + 0.212(rs2236007) + 0.290(rs9693444) + 0.404(rs6504950) + 17.390(rs6762644) + 0.044(rs4849887) + 0.077(rs616488) + 17.282(rs7707921) + 0.008(rs941764) + 0.039(rs11820646) + 0.358(rs3903072) + 0.570(rs13162653) + 17.397(rs17529111) + 0.135(rs720475) + 16.955(rs204247) + 0.341(rs9790517)
Heritability0.097
Regression TypeOLS
Download FileGR00096.csv